Seems I’ve seen some things that the Li batteries can be hard on older trolling motors, much truth to that?
The issue you may be talking about is voltage drop and rebound differences between AGM/Flooded and LI batteries. If you crank your trolling motor up to a 10 a flooded battery voltage will drop, then will slowly rebound to a normal voltage once you kill the motor or drop the speed. If you do this on a LI battery the voltage will not drop, or very little at all. Too high of voltage for an extended period of time can burn the motor out. No real issues with short bursts, 25-30 seconds.
Also, virtually all on-board battery chargers with a AGM setting will charge a LI battery, they just will not charge them to 100% capacity. If you have a AGM setting on your charger, then it will most likely get your LI battery to 80-90%. Storing a LI battery below 100% normally(depends on your battery, check your manual) will not cause any harm to the LI battery like it can with a flooded battery, which you want to keep at 100%. Most LI manufacturers want you to store a LI battery at around 80%. Even leaving a LI battery for a few weeks at 50% will, in most cases, cause absolutely no harm.