The first thing you need to do is install a transducer mounting board so you can adjust the transducer position without drilling extra holes in your transom. I use marine goop to seal the holes holding the board to the transom. Another option is 3M 5200. You don’t want a leak there. Your Helix manual should have directions for transducer placement, but you will probably have to spend some time test on the water to see how well the ducer works and adjusting location.
Other than that, you need a 3-amp fuse as close as practical to the + battery terminal, run the wires and tie-wrap them down so they don’t wear against any sharp edges. If you’re routing through holes in aluminum, sleeve the wires. Wire direct to the battery, not to a fuse panel to avoid voltage drop. Sonar needs to run off your starter battery, not the trolling motor battery.