I would check with the folks at Airmar, 603-673-9570. They know more about transducers than anyone in the industry. I generally defer to Lowrance or Airmar for thru-hull questions. It can get a little tricky. We mostly see it done in fiberglass boats. The thicker the hull, the less effective the sonar will be. For aluminum, I think they generally do the ol’ hole-in-the-boat method rather than shoot-thru-hull.
The other issue is generally one of poor installation.
You might also call Kevin Turner at RiverPro boats, 636-797-2628 and ask him about standard transducer installation on a jet boat. He should know…
By the way, most Lowrance, Garmin, Humminbird, and Raymarine units will offer several options in transducers, depending on your needs.